WebNov 8, 2024 · bumphunter: Methods for function 'bumphunter' in Package 'minfi' combineArrays: A method for combining different types of methylation arrays... WebThe different steps include: importing the raw data, quality control checks, data filtering, different normalization methods and probe-wise differential methylation analysis. Additional approaches such as differential methylation analysis of regions, gene ontology analysis and estimating cell type composition will also be presented. Introduction
bumphunter function - RDocumentation
WebNov 15, 2024 · Experimental Design:Identification of differentially methylated regions (DMR) was performed with bumphunter on "The Cancer Genome Atlas (TCGA)" dataset, and clinical utility was assessed using quantitative methylation-specific PCR assay in multiple sets of primary NSCLC and body fluids that included serum, pleural effusion, and ascites … WebREADME.md. This is the developer version of the bumphunter R/Bioconductor package. Bioconductor build/check report. nike employee relations manager salary
bumphunter output clarification - Bioconductor
WebNov 8, 2024 · This Simulation Data Set contains 16 samples, all of them are actually originally from one sample but modified into DMP and DMR, also alone with some errors variance. In this 16 sample dataset, we simulated 8 samples are control and 8 sample as case, samples are marked in pd of EPICSimData object. WebExample report using bumphunter results Leonardo Collado-Torres Lieber Institute for Brain Development, Johns Hopkins Medical CampusCenter for Computational Biology, Johns Hopkins University ... , "Cluster Length" = "clusterL"), significantVar = NULL, output = "bumphunter-example", outdir = "bumphunter-example", device = "png") nsw oce exams